Rare disease biomarker discovery beyond the genome.

Reveal functional rare disease biology to improve disease monitoring & therapeutic development.

While the vast majority of rare diseases are genetic in origin, it is becoming increasingly clear that genetics alone is insufficient to fully understand rare disease pathobiology. Genetic perturbations, even from a single gene, can have ripple effects across multiple biological pathways, causing the disease to manifest differently in patients with the same mutation.

Sapient takes rare disease biomarker discovery beyond the genome by directly measuring the proteins, metabolites, lipids, and immune signals that reflect functional disease biology. Integrating these dynamic molecular readouts with DNA and RNA sequencing insights allows for better understanding of how an individual’s genotype associates with their disease phenotype.

Key questions we can answer in your rare disease studies:

Why do patients with the same genetic variant exhibit different disease severity or outcomes?

Which downstream molecular pathways are disrupted by a causative mutation – and are most amenable to therapeutic intervention?

What non-genetic functional biomarkers reflect disease activity or progression?

Which molecular features explain phenotypic heterogeneity within a rare disease population?

Biomarker discovery with a multi-omics lens.

Elucidate the varied cascading effects that a single gene alteration can have across metabolic and signaling networks, and uncover disrupted pathways that can be targeted to correct the pathological state.

Deep phenotyping for patient stratification.

Dechiper functional differences among patients who appear similar based on genetics or clinical presentation, revealing distinct disease mechanisms that inform more precise target selection.

Mechanistic insights to map disease activity & drug resistance.

Leverage minimally invasive sampling to longitudinally evaluate biomarkers and response to therapies in patient populations that are often fragile and/or young.

Drug response monitoring at the protein level.

Many new rare diseases therapies
aim to restore or compensate for a missing or dysfunctional protein. Our proteomics methods enable the direct quantification of proteins, providing a more accurate readout of biological activity and therapeutic effect. 

rare disease biomarkers

Next-gen approaches to extend rare disease biomarker discovery.

We’ve innovated our methods to expand multi-omics discovery beyond the genome, adding new layers of insight to enhance our understanding of rare diseases and drive earlier diagnosis, improved patient stratification, and faster therapeutic development. These include:

RARE DISEASE APPLICATION NOTE

Going Beyond the Genome in Rare Disease: The Value of a Multi-Omics Approach

Explore why, in order to fully understand the systemic pathobiology of rare diseases, we must look beyond genetic sequence alone.

Validate rare disease biomarkers with DynamiQ™ insights.

DynamiQ is Sapient’s longitudinal molecular‑clinical data resource, built from tens of thousands of deeply phenotyped human samples. For oncology programs, DynamiQ enables:

  • Cross‑validation of biomarkers identified through discovery studies in independent cohorts – including PAH, mitochondrial disease, and congenital heart disease
  • Biological contextualization of findings made in small cohorts within and across other rare disease cohorts
  • Exploration of associations between observed molecular signatures and treatment exposure and/or clinical outcomes
dynamiq contextualize metabolomics

Bridge the gap between inferred and functional biology to de-risk translation.

dynamiq disease trajectories

Layer your data and ours to orthogonally validate findings and extend discoveries.

metabolomics dynamiq expansion

Confirm discoveries in real-world patient data to build confidence for translation.

In what ways has Sapient advanced rare disease biomarker discovery?

non-canonical proteins

Beyond DNA and RNA: Exposing What Sequencing Misses in Target ID and Biomarker Discovery

metabolite analysis pah biomarker

Sapient Contributes to Landmark Study Published in Science Linking Lysosomal Biology and Oxysterol Metabolism to Pulmonary Arterial Hypertension (PAH)

pah biomarkers oxysterols bile acids

Lysosomal dysfunction and inflammatory sterol metabolism in pulmonary arterial hypertension

multi-omics technology

Biocom LifeLines: Sapient Bioanalytics is Using a Multi-Omics Approach That Looks Beyond the Genome in Drug Discovery

rare disease biomarker

Discovery of a Biomarker of Biological Processes for Rare Disease

pd biomarker discovery case study

Discovery of a PD Biomarker to Predict Drug Response

Ready to discover more?

Connect with our scientists to discuss the rare disease questions you want to answer. We’ll show you how our multi-omics services can deliver the actionable insights you’re looking for.

multi-omics drug development CRO lab